MACADAM Explore

Malo Le Boulch, Patrice Déhais, Sylvie Combes and Géraldine Pascal

GenPhySE & Sigenae, Université de Toulouse, INRAE, INPT, ENVT, Castanet Tolosan, France

Explore the MetAboliC pAthway DAtabase for complex Microbial community function analysis.


Taxonomy (required): Enter a taxonomy name, e.g., Tannerella forsythia or Firmicutes or Escherichia.
For a multiple search, separate names with a comma,
e.g., Staphylococcus aureus, Kitasatospora aureofaciens.
Rank Choose a taxonomy rank.
Query type The target organisms will be the ones strictly named, or not.
Options to limit your query:

Pathway or functional features:

You can limit your search by using the name of a function,
e.g., Urea Degradation I

Score max:

You can decrease the maximum completeness score of the metabolic pathway

Score min:

You can increase the minimum completeness score of the metabolic pathway

MetaCyc class hierarchy :

You can search a ID of MetaCyc class hierarchy present in metabolic pathways,
e.g., Antibiotic-Biosynthesis

Metabolite:

You can search a metabolite present in metabolic pathways,
e.g., butyrate

Reaction:

You can limit your search by using the name of a reaction,
e.g., succinyl CoA synthesis

Enzyme:

You can limit your search by using the name of an enzyme,
e.g., hydrolase

EC number:

You can limit your search by using EC numbers,
e.g., 1.1.1.49